Expérience

 
 
 
 
 
2021-01-09 – Actuellement
Posieux, Switzerland

Responsable de la coordination digitale de la bioinformatique

Agroscope

  • Collaboration avec des chercheurs pour développer des solutions informatiques pratiques et initié des projets pour mettre en œuvre des solutions soutenant des analyses avancées.
  • Établissement de partenariats stratégiques et communication des progrès et résultats de projets aux parties prenantes, assurant l’alignement avec les objectifs.
 
 
 
 
 
2020-01-07 – 2021-31-08
Saint Sulpice, Switzerland

Experte en Bioinformatique

SOPHiA GENETICS

  • Amélioration de la performance analytique des pipelines liés aux gènes fusionés
  • Création de système de rapports automatizé pour données provienant de l’ARN.
 
 
 
 
 
2019-01-08 – 2020-01-07
Saint Sulpice, Switzerland

Senior Bioinformaticienne

SOPHiA GENETICS

  • Amélioration de la performance analytique des pipelines liés aux gènes fusionés
  • Présentation et communication des résultats aux collègues et clients
 
 
 
 
 
2016-01-10 – Actuellement
Saint Sulpice, Suisse

Spécialiste en bioinformatique

SOPHiA GENETICS

  • Analyse de données génomiques de différentes plateformes de séquençage
  • Présentation et communication des résultats aux clients (hôpitaux et centres de recherche)
  • Analyses et visualizations de données complexes, amélioration des pipelines
 
 
 
 
 
2016-01-05 – 2016-01-09
à distance

Stagiaire

Google Summer of Code: National Resource for Network Biology (NRNB)

Développement de vignettes pour la bibliothèque R permettant de réaliser des analyses de réseaux avec Cytoscape RCy3
 
 
 
 
 
2011-01-01 – 2016-30-04
Vancouver, C.-B., Canada

Assistante d’enseignment

Université de la Colombie-Britannique

Cours: EOS 111 Laboratory Exploration of Planet Earth, EOS 475 Marine Microbiology, EOS 474 Marine Pollution, Statistics 547 Basic Training for Data Science
 
 
 
 
 
2005-01-09 – 2007-15-06
Edgewater, MD, États Unis

Technicienne en biologie

Smithsonian Institution: Smithsonian Environmental Research Center: Marine Invasions Lab

Publications

Lien pour Google Scholar

Présentations

2023 adminR at the BNS November 2023 A tech talk about APIs in R. The talk ranged from unraveling the basics to delving into real-world projects. Zurich, Switzerland

2023 Enhancer Symposium Oral presentation: Streamlining Research Data Storage: A user-centric approach. Bern, Switzerland

2022 Enhancer Symposium Poster presentation: Agroscope: Access to HPC prototype. Bern, Switzerland

2018 OpenCon switzerland - Code sharing and review in the open with rOpenSci Bern, Switzerland

2016 International Society for Microbial Ecology: Oral presentation: “Network analysis reveals the strong role of the environment in structuring microbial communities in a estuarine environment “ Poster presentation: Phylogenetic dynamics of marine viruses and their putative hosts” Montreal,PQ, Canada

2016 Viruses of microbes (EMBO Conference) : Poster presentations: “Temporal shifts in the phylogenetic structure of viral and host communities implies their central role as structuring elements in marine planktonic communities.” and “Simple and reproducible visualization of virus-host co-occurrence networks using RCy3 and Cytoscape.” Liverpool, United Kingdom

2014 Viruses of microbes (EMBO Conference): Poster presentation: “Describing the richness of the Picornavirales in coastal waters along a nutrient gradient using high-throughput sequencing.” ETH, Zurich, Switzerland.

2013 Aquatic Virus Workshop 7: Poster presentation: “Distribution and patchiness of Picornavirales in coastal waters.” University of South Florida, Saint Petersburg, Florida, USA.

2013 Center for Microbial Diversity and Evolution/CIFAR Integrated Microbial Diversity: Poster presentation: “The high richness of aquatic RNA viral communities in coastal British Columbia revealed using amplicon deep sequencing.” Whistler, BC.

2012 Canadian Society for Microbiology Conference: Oral Presentation: “The uneven structure of RNA viral communities in coastal B.C. revealed using amplicon deep sequencing.” Vancouver, BC.

2012 Center for Microbial Diversity and Evolution: Poster presentation: “The uneven structure of aquatic RNA viral communities in coastal British Columbia revealed using deep amplicon sequencing.” Harrison Hot Springs, BC.

2012 CIFAR Integrated Microbial Diversity: Poster presentation: “The uneven structure of aquatic RNA viral communities in coastal British Columbia revealed using deep amplicon sequencing.” Quebec City, QC.

2011 UBC/ SFU/ UVic/ VIU Ecology and Evolution Retreat: Poster presentation: “RNA viral richness at Jericho Pier.” Brackendale, BC

2011 Center for Microbial Diversity and Evolution: Poster presentation: “Viral and bacterial abundances at Jericho Pier (Vancouver, BC) show variation over time and correlation with environmental parameters.” Harrison Hot Springs, BC.

Contact